Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs7502875 chr17:45823227 A/C 0.000117 170 24.63 21.1 15.4 KM Plot
UCEC rs7505634 chr18:9719373 A/T 6.54E-7 171 21.9 36.83 5.87 KM Plot
UCEC rs75103301 chr3:48094037 G/A 6.54E-7 173 22.6 22.25 11.53 KM Plot
UCEC rs75239420 chr14:105066810 T/C 0 167 22.57 22.78 1.67 KM Plot
UCEC rs75353400 chr7:20671281 A/T 1.29E-11 172 22.63 20.13 4.33 KM Plot
UCEC rs75396930 chr7:20663898 G/A 0 173 22.67 20.13 4.33 KM Plot
UCEC rs75464175 chr7:20654168 A/G 0 173 22.67 20.13 4.33 KM Plot
UCEC rs75465236 chr7:20679568 A/G 9.52E-12 174 22.67 19.17 4.33 KM Plot
UCEC rs75494098 chr7:20663096 C/T 0 173 22.67 20.13 4.33 KM Plot
UCEC rs75495305 chr7:20666588 T/G 0 173 22.67 20.13 4.33 KM Plot
UCEC rs7557024 chr2:81461019 A/G 0.000113 174 17.53 22.7 22.72 KM Plot
UCEC rs75801826 chr4:57261028 A/T 0.000132 172 32.2 22.08 20.8 KM Plot
UCEC rs75833673 chr14:105060269 C/T 0 167 22.63 22.78 1.67 KM Plot
UCEC rs75838789 chr14:105061132 C/T 0 168 22.57 22.78 1.67 KM Plot
UCEC rs75865729 chr7:64174898 T/C 0 174 22.57 21.98 2.4 KM Plot